Likelihood-free inference with emulator networks

05/23/2018
by   Jan-Matthis Lueckmann, et al.
0

Approximate Bayesian Computation (ABC) provides methods for Bayesian inference in simulation-based stochastic models which do not permit tractable likelihoods. We present a new ABC method which uses probabilistic neural emulator networks to learn synthetic likelihoods on simulated data -- both local emulators which approximate the likelihood for specific observed data, as well as global ones which are applicable to a range of data. Simulations are chosen adaptively using an acquisition function which takes into account uncertainty about either the posterior distribution of interest, or the parameters of the emulator. Our approach does not rely on user-defined rejection thresholds or distance functions. We illustrate inference with emulator networks on synthetic examples and on a biophysical neuron model, and show that emulators allow accurate and efficient inference even on high-dimensional problems which are challenging for conventional ABC approaches.

READ FULL TEXT
research
11/06/2017

Flexible statistical inference for mechanistic models of neural dynamics

Mechanistic models of single-neuron dynamics have been extensively studi...
research
02/21/2020

Split-BOLFI for for misspecification-robust likelihood free inference in high dimensions

Likelihood-free inference for simulator-based statistical models has rec...
research
12/22/2021

Efficient Multifidelity Likelihood-Free Bayesian Inference with Adaptive Computational Resource Allocation

Likelihood-free Bayesian inference algorithms are popular methods for ca...
research
07/17/2020

SBI – A toolkit for simulation-based inference

Scientists and engineers employ stochastic numerical simulators to model...
research
07/27/2019

Max-and-Smooth: a two-step approach for approximate Bayesian inference in latent Gaussian models

With modern high-dimensional data, complex statistical models are necess...
research
04/08/2021

Synthetic Likelihood in Misspecified Models: Consequences and Corrections

We analyse the behaviour of the synthetic likelihood (SL) method when th...
research
06/23/2021

Approximate Bayesian Computation with Path Signatures

Simulation models of scientific interest often lack a tractable likeliho...

Please sign up or login with your details

Forgot password? Click here to reset