Molecular Structure-Property Co-Trained Foundation Model for In Silico Chemistry
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Recently, deep learning approaches have been extensively studied for various problems in chemistry, such as virtual screening, de novo molecule design, etc. Despite the impressive successes, end-to-end training for specific tasks usually requires separately designed networks, so it's often difficult to acquire a unified principle to synergistically combine existing architectures and training datasets for novel tasks. To address this, inspired by recent advances of pre-trained multi-modal foundation models such as Vision-Language Pretrained models (VLP), here we present a novel multimodal foundation model that can be used in silico for various downstream tasks in chemistry. Specifically, our framework, dubbed as the structure-property multi-modal (SPMM) foundation model, is based on the dual-stream transformer with X-shape attention, so that it can align the molecule structure and the chemical properties in a common embedding space. Accordingly, SPMM can simultaneously perform chemical property prediction from given structure-describing strings and allows the generation of molecular structures for given chemical properties, which was previously not possible with a single architecture. Furthermore, we show that the outstanding unimodal representation of a molecule emerges from multimodal learning, which has the potential to be fine-tuned for many other downstream tasks.
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