High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory

04/05/2022

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We show that the wavefront algorithm can achieve higher pairwise read alignment throughput on a UPMEM PIM system than on a server-grade multi-threaded CPU system.

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High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory

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High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory

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