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05/04/2023
Making a Network Orchard by Adding Leaves
Phylogenetic networks are used to represent the evolutionary history of ...
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03/02/2023
A general Bayesian approach to design adaptive clinical trials with time-to-event outcomes
Clinical trials are an integral component of medical research. Trials re...
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11/01/2022
A Near-Linear Kernel for Two-Parsimony Distance
The maximum parsimony distance d_MP(T_1,T_2) and the bounded-state maxim...
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07/01/2022
Embedding phylogenetic trees in networks of low treewidth
Given a rooted, binary phylogenetic network and a rooted, binary phyloge...
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07/27/2020
New FPT algorithms for finding the temporal hybridization number for sets of phylogenetic trees
We study the problem of finding a temporal hybridization network for a s...
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04/05/2020
Maximum parsimony distance on phylogenetictrees: a linear kernel and constant factor approximation algorithm
Maximum parsimony distance is a measure used to quantify the dissimilari...
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12/09/2019
Combining Networks using Cherry Picking Sequences
Phylogenetic networks are important for the study of evolution. The numb...
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10/24/2019
Cutting an alignment with Ockham's razor
In this article, we investigate different parsimony-based approaches tow...
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07/19/2019
A Practical Fixed-Parameter Algorithm for Constructing Tree-Child Networks from Multiple Binary Trees
We present the first fixed-parameter algorithm for constructing a tree-c...
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06/28/2019
Modelling Airway Geometry as Stock Market Data using Bayesian Changepoint Detection
Numerous lung diseases, such as idiopathic pulmonary fibrosis (IPF), exh...
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06/18/2019
Rooting for phylogenetic networks
This paper studies the relationship between undirected (unrooted) and di...
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09/04/2018
Treewidth of display graphs: bounds, brambles and applications
Phylogenetic trees and networks are leaf-labelled graphs used to model e...
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04/19/2018
A third strike against perfect phylogeny
Perfect phylogenies are fundamental in the study of evolutionary trees b...
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08/25/2017